{
  "_id": "6a2004adb401979e73446334",
  "Package": "BHAI",
  "Title": "Estimate the Burden of Healthcare-Associated Infections",
  "Version": "0.99.2",
  "Authors@R": "person(\"Benedikt\", \"Zacher\", email = \"ZacherB@rki.de\", role = c(\"aut\", \"cre\"))",
  "Author": "Benedikt Zacher [aut, cre]",
  "Maintainer": "Benedikt Zacher <ZacherB@rki.de>",
  "Description": "Provides an approach which is based on the methodology of\nthe Burden of Communicable Diseases in Europe (BCoDE) and can\nbe used for large and small samples such as individual\ncountries. The Burden of Healthcare-Associated Infections\n(BHAI) is estimated in disability-adjusted life years, number\nof infections as well as number of deaths per year. Results can\nbe visualized with various plotting functions and exported into\ntables.",
  "License": "GPL-3",
  "LazyData": "true",
  "RoxygenNote": "6.1.1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 10:37:48 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2019-10-06 09:20:02 UTC",
  "RemoteUrl": "https://github.com/cran/BHAI",
  "RemoteRef": "HEAD",
  "RemoteSha": "1c9b40ccc1ee38958c9f050b8609f92b2acb25fc",
  "MD5sum": "714d87c7a8b6a7afa91489085359caed",
  "_user": "cran",
  "_type": "src",
  "_file": "BHAI_0.99.2.tar.gz",
  "_fileid": "2b0d7fe6722b4c0156ccbc76fe1143865b39cca7d81fbceb5884380c1c4d9598",
  "_filesize": 290459,
  "_sha256": "2b0d7fe6722b4c0156ccbc76fe1143865b39cca7d81fbceb5884380c1c4d9598",
  "_created": "2026-06-03T10:37:48.000Z",
  "_published": "2026-06-03T10:40:45.518Z",
  "_distro": "noble",
  "_jobs": [
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      "time": 134,
      "config": "linux-devel-x86_64",
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      "config": "wasm-release",
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  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26879231101",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/BHAI",
  "_commit": {
    "id": "1c9b40ccc1ee38958c9f050b8609f92b2acb25fc",
    "author": "Benedikt Zacher <ZacherB@rki.de>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.99.2\n",
    "time": 1570353602
  },
  "_maintainer": {
    "name": "Benedikt Zacher",
    "email": "zacherb@rki.de"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "prevtoinc",
      "role": "Imports"
    },
    {
      "package": "MCMCpack",
      "role": "Imports"
    },
    {
      "package": "plotrix",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 163,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BHAI"
  },
  "_mentions": 1,
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BHAI.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.99.2",
      "date": "2019-10-06"
    }
  ],
  "_exports": [
    "bhai",
    "bhai.barplot",
    "bhai.circleplot",
    "bhai.prettyTable",
    "bhai.strataplot",
    "PPS",
    "sample.pps"
  ],
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      "name": "eu_pps",
      "title": "Aggregated data of the ECDC PPS 2010-2011.",
      "object": "eu_pps_2011",
      "class": [
        "PPS"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "german_pps_conv",
      "title": "Aggregated data of the german PPS 2010-2011 (convenience sample).",
      "object": "german_pps_2011_conv",
      "class": [
        "PPS"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "hospital_discharges",
      "title": "Hospital discharges in Germany (2011)",
      "object": "german_pps_2011_repr",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "length_of_stay",
      "title": "Average length of stay of survey patients in german PPS 2011 (representative sample)",
      "object": "german_pps_2011_repr",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "loi_pps",
      "title": "A list containing length of infections from all patients in the german PPS 2011 representative sample.",
      "object": "german_pps_2011_repr",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "mccabe_life_exp",
      "title": "Named list containing remaining life expectancies for each McCabe score (NONFATAL, ULTFATAL, RAPFATAL).",
      "object": "german_pps_2011_repr",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "mccabe_scores_distr",
      "title": "The observed McCabe scores (counts) for each infection, age and gender stratum from the ECDC PPS 2011-2012.",
      "object": "german_pps_2011_repr",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "num_hai_patients",
      "title": "Number of cases for each infection in the german PPS 2011 (representative sample)",
      "object": "german_pps_2011_repr",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "num_hai_patients_by_stratum",
      "title": "Stratified number of cases for each infection in the german PPS 2011 (representative sample)",
      "object": "german_pps_2011_repr",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "num_hai_patients_by_stratum_prior",
      "title": "Stratified number of cases for each infection in the german PPS 2011 (convenience sample). This distribution is used as a Prior for the representative sample.",
      "object": "german_pps_2011_repr",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "num_survey_patients",
      "title": "Number of survey patients in the german PPS 2011 (representative sample).",
      "object": "german_pps_2011_repr",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "population",
      "title": "Population size of Germany in 2011.",
      "object": "german_pps_2011_repr",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "sim_pps",
      "title": "Simulated/subsampled data sets from european PPS",
      "object": "simulations",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "sim_pps_bhai",
      "title": "BHAI with default options was applied to simulated/subsampled data sets from european PPS",
      "object": "simulations",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "sim_pps_bhai_prior",
      "title": "BHAI with prior was applied to simulated/subsampled data sets from european PPS",
      "object": "simulations",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "sim_pps_stratified",
      "title": "BHAI with stratified sampling was applied to simulated/subsampled data sets from european PPS",
      "object": "simulations",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "bhai-methods",
      "title": "Main function of the package to estimation of the burden of healthcare-associated infections",
      "topics": [
        "bhai",
        "bhai,PPS,ANY-method",
        "bhai,PPS-method"
      ]
    },
    {
      "page": "BHAI",
      "title": "BHAI:",
      "topics": [
        "BHAI-package",
        "BHAI"
      ]
    },
    {
      "page": "bhai.barplot",
      "title": "Barplot of cases, deaths and DALYs.",
      "topics": [
        "bhai.barplot"
      ]
    },
    {
      "page": "bhai.circleplot",
      "title": "Summary plot of number of infections, deaths and DALYs",
      "topics": [
        "bhai.circleplot"
      ]
    },
    {
      "page": "bhai.prettyTable",
      "title": "Create summary table",
      "topics": [
        "bhai.prettyTable"
      ]
    },
    {
      "page": "bhai.strataplot",
      "title": "Stratified barplot of cases, deaths and DALYs.",
      "topics": [
        "bhai.strataplot"
      ]
    },
    {
      "page": "eu_pps",
      "title": "Aggregated data of the ECDC PPS 2010-2011.",
      "topics": [
        "eu_pps"
      ]
    },
    {
      "page": "german_pps_conv",
      "title": "Aggregated data of the german PPS 2010-2011 (convenience sample).",
      "topics": [
        "german_pps_conv"
      ]
    },
    {
      "page": "hospital_discharges",
      "title": "Hospital discharges in Germany (2011)",
      "topics": [
        "hospital_discharges"
      ]
    },
    {
      "page": "length_of_stay",
      "title": "Average length of stay of survey patients in german PPS 2011 (representative sample)",
      "topics": [
        "length_of_stay"
      ]
    },
    {
      "page": "loi_pps",
      "title": "A list containing length of infections from all patients in the german PPS 2011 representative sample.",
      "topics": [
        "loi_pps"
      ]
    },
    {
      "page": "mccabe_life_exp",
      "title": "Named list containing remaining life expectancies for each McCabe score (NONFATAL, ULTFATAL, RAPFATAL).",
      "topics": [
        "mccabe_life_exp"
      ]
    },
    {
      "page": "mccabe_scores_distr",
      "title": "The observed McCabe scores (counts) for each infection, age and gender stratum from the ECDC PPS 2011-2012.",
      "topics": [
        "mccabe_scores_distr"
      ]
    },
    {
      "page": "num_hai_patients",
      "title": "Number of cases for each infection in the german PPS 2011 (representative sample)",
      "topics": [
        "num_hai_patients"
      ]
    },
    {
      "page": "num_hai_patients_by_stratum",
      "title": "Stratified number of cases for each infection in the german PPS 2011 (representative sample)",
      "topics": [
        "num_hai_patients_by_stratum"
      ]
    },
    {
      "page": "num_hai_patients_by_stratum_prior",
      "title": "Stratified number of cases for each infection in the german PPS 2011 (convenience sample). This distribution is used as a Prior for the representative sample.",
      "topics": [
        "num_hai_patients_by_stratum_prior"
      ]
    },
    {
      "page": "num_survey_patients",
      "title": "Number of survey patients in the german PPS 2011 (representative sample).",
      "topics": [
        "num_survey_patients"
      ]
    },
    {
      "page": "population",
      "title": "Population size of Germany in 2011.",
      "topics": [
        "population"
      ]
    },
    {
      "page": "PPS",
      "title": "Create a PPS object",
      "topics": [
        "PPS"
      ]
    },
    {
      "page": "PPS-class",
      "title": "This class is a generic container for PPS data sets.",
      "topics": [
        ".PPS",
        "PPS-class"
      ]
    },
    {
      "page": "sample.pps",
      "title": "Simulate PPS data",
      "topics": [
        "sample.pps"
      ]
    },
    {
      "page": "sim_pps",
      "title": "Simulated/subsampled data sets from european PPS",
      "topics": [
        "sim_pps"
      ]
    },
    {
      "page": "sim_pps_bhai",
      "title": "BHAI with default options was applied to simulated/subsampled data sets from european PPS",
      "topics": [
        "sim_pps_bhai"
      ]
    },
    {
      "page": "sim_pps_bhai_prior",
      "title": "BHAI with prior was applied to simulated/subsampled data sets from european PPS",
      "topics": [
        "sim_pps_bhai_prior"
      ]
    },
    {
      "page": "sim_pps_stratified",
      "title": "BHAI with stratified sampling was applied to simulated/subsampled data sets from european PPS",
      "topics": [
        "sim_pps_stratified"
      ]
    }
  ],
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    "coda",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mcmc",
    "MCMCpack",
    "pillar",
    "pkgconfig",
    "plotrix",
    "prevtoinc",
    "purrr",
    "quantreg",
    "R6",
    "rlang",
    "SparseM",
    "survival",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "bhai",
  "_universes": [
    "cran"
  ],
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}