{
  "_id": "6ae309673d0f299392dd08a1",
  "Package": "BGData",
  "Version": "2.4.1",
  "License": "MIT + file LICENSE",
  "Title": "A Suite of Packages for Analysis of Big Genomic Data",
  "Description": "An umbrella package providing a phenotype/genotype data\nstructure and scalable and efficient computational methods for\nlarge genomic datasets in combination with several other\npackages: 'BEDMatrix', 'LinkedMatrix', and 'symDMatrix'.",
  "Authors@R": "c(\nperson(\"Gustavo\", \"de los Campos\", email = \"gustavoc@msu.edu\", role = c(\"aut\")),\nperson(\"Alexander\", \"Grueneberg\", email = \"cran@agrueneberg.info\", role = c(\"aut\", \"cre\")),\nperson(\"Paulino\", \"Perez\", email = \"perpdgo@gmail.com\", role = c(\"ctb\")),\nperson(\"Ana\", \"Vazquez\", email = \"avazquez@epi.msu.edu\", role = c(\"ctb\")))",
  "URL": "https://github.com/QuantGen/BGData",
  "BugReports": "https://github.com/QuantGen/BGData/issues",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-29 08:47:06 UTC",
    "User": "root"
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  "Author": "Gustavo de los Campos [aut], Alexander Grueneberg [aut, cre],\nPaulino Perez [ctb], Ana Vazquez [ctb]",
  "Maintainer": "Alexander Grueneberg <cran@agrueneberg.info>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2023-03-22 09:40:05 UTC",
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    "message": "version 2.4.1\n",
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  "_devurl": "https://github.com/quantgen/bgdata",
  "_searchresults": 4,
  "_topics": [
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  "_assets": [
    "extra/BGData.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
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  "_realowner": "quantgen",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-05-11"
    },
    {
      "version": "2.0.0",
      "date": "2018-08-24"
    },
    {
      "version": "2.1.0",
      "date": "2019-01-25"
    },
    {
      "version": "2.2.0",
      "date": "2020-08-02"
    },
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      "date": "2021-10-05"
    },
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      "date": "2021-12-08"
    },
    {
      "version": "2.4.1",
      "date": "2023-03-22"
    }
  ],
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    "as.BGData",
    "BGData",
    "chunkedApply",
    "chunkedMap",
    "findRelated",
    "FWD",
    "geno",
    "geno<-",
    "getG",
    "getG_symDMatrix",
    "GWAS",
    "load.BGData",
    "map",
    "map<-",
    "orderedMerge",
    "pheno",
    "pheno<-",
    "preprocess",
    "readRAW",
    "readRAW_big.matrix",
    "readRAW_matrix",
    "segments",
    "summarize"
  ],
  "_help": [
    {
      "page": "BGData-package",
      "title": "A Suite of Packages for Analysis of Big Genomic Data",
      "topics": [
        "BGData-package"
      ]
    },
    {
      "page": "as.BGData",
      "title": "Convert Other Objects to BGData Objects",
      "topics": [
        "as.BGData",
        "as.BGData.BEDMatrix",
        "as.BGData.ColumnLinkedMatrix",
        "as.BGData.RowLinkedMatrix"
      ]
    },
    {
      "page": "BGData",
      "title": "Creates a New BGData Instance",
      "topics": [
        "BGData"
      ]
    },
    {
      "page": "BGData-class",
      "title": "Container for Phenotype and Genotype Data",
      "topics": [
        "BGData-class",
        "geno,BGData-method",
        "geno<-,BGData-method",
        "map,BGData-method",
        "map<-,BGData-method",
        "pheno,BGData-method",
        "pheno<-,BGData-method"
      ]
    },
    {
      "page": "chunkedApply",
      "title": "Applies a Function on Each Row or Column of a File-Backed Matrix",
      "topics": [
        "chunkedApply"
      ]
    },
    {
      "page": "chunkedMap",
      "title": "Applies a Function on Each Chunk of a File-Backed Matrix",
      "topics": [
        "chunkedMap"
      ]
    },
    {
      "page": "file-backed-matrices",
      "title": "File-Backed Matrices",
      "topics": [
        "file-backed-matrices"
      ]
    },
    {
      "page": "findRelated",
      "title": "Find related individuals in a relationship matrix",
      "topics": [
        "findRelated",
        "findRelated.matrix",
        "findRelated.symDMatrix"
      ]
    },
    {
      "page": "FWD",
      "title": "Performs Forward Regressions",
      "topics": [
        "FWD"
      ]
    },
    {
      "page": "geno",
      "title": "Getting/Setting Genotypes, Sample Information, and Variant Information",
      "topics": [
        "geno",
        "geno<-",
        "map",
        "map<-",
        "pheno",
        "pheno<-"
      ]
    },
    {
      "page": "geno-class",
      "title": "An Abstract S4 Class Union of Matrix-Like Types",
      "topics": [
        "geno-class"
      ]
    },
    {
      "page": "getG",
      "title": "Computes a Genomic Relationship Matrix",
      "topics": [
        "getG"
      ]
    },
    {
      "page": "getG_symDMatrix",
      "title": "Computes a Very Large Genomic Relationship Matrix",
      "topics": [
        "getG_symDMatrix"
      ]
    },
    {
      "page": "GWAS",
      "title": "Performs Single Marker Regressions Using BGData Objects",
      "topics": [
        "GWAS"
      ]
    },
    {
      "page": "load.BGData",
      "title": "Loads BGData (and Other) Objects from .RData Files",
      "topics": [
        "load.BGData"
      ]
    },
    {
      "page": "multi-level-parallelism",
      "title": "Multi-Level Parallelism",
      "topics": [
        "multi-level-parallelism"
      ]
    },
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      "page": "orderedMerge",
      "title": "Merge Two Data Frames Keeping the Order of the First",
      "topics": [
        "orderedMerge"
      ]
    },
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      "title": "Center, scale, and impute data",
      "topics": [
        "preprocess"
      ]
    },
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      "title": "Creates a BGData Object From a .raw File or a .ped-Like File",
      "topics": [
        "readRAW",
        "readRAW_big.matrix",
        "readRAW_matrix"
      ]
    },
    {
      "page": "segments",
      "title": "Find non-overlapping segments based on a summary statistic",
      "topics": [
        "segments"
      ]
    },
    {
      "page": "summarize",
      "title": "Generates Various Summary Statistics",
      "topics": [
        "summarize"
      ]
    }
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