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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "adegenet" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'adegenet: Exploratory Analysis of Genetic and Genomic Data'
version: 2.1.11
doi: 10.1093/bioinformatics/btn129
identifiers:
- type: doi
  value: 10.32614/CRAN.package.adegenet
abstract: Toolset for the exploration of genetic and genomic data. Adegenet provides
  formal (S4) classes for storing and handling various genetic data, including genetic
  markers with varying ploidy and hierarchical population structure ('genind' class),
  alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight').
  It also implements original multivariate methods (DAPC, sPCA), graphics, statistical
  tests, simulation tools, distance and similarity measures, and several spatial methods.
  A range of both empirical and simulated datasets is also provided to illustrate
  various methods.
authors:
- family-names: Jombart
  given-names: Thibaut
  orcid: https://orcid.org/0000-0003-2226-8692
- family-names: Kamvar
  given-names: Zhian N.
  email: zkamvar@gmail.com
  orcid: https://orcid.org/0000-0003-1458-7108
preferred-citation:
  type: article
  title: 'adegenet: a R package for the multivariate analysis of genetic markers'
  authors:
  - family-names: Jombart
    given-names: T.
  journal: Bioinformatics
  year: '2008'
  volume: '24'
  doi: 10.1093/bioinformatics/btn129
  start: 1403-1405
repository: https://CRAN.R-project.org/package=adegenet
repository-code: https://github.com/thibautjombart/adegenet
url: https://github.com/thibautjombart/adegenet
date-released: '2025-02-06'
contact:
- family-names: Kamvar
  given-names: Zhian N.
  email: zkamvar@gmail.com
  orcid: https://orcid.org/0000-0003-1458-7108
references:
- type: article
  title: 'adegenet 1.3-1: new tools for the analysis of genome-wide SNP data'
  authors:
  - family-names: Jombart
    given-names: T.
  - family-names: Ahmed
    given-names: I.
  journal: Bioinformatics
  year: '2011'
  doi: 10.1093/bioinformatics/btr521