Package 'TrackTrap'

Title: Model Cumulative Growing Degree-Days for Pest Monitoring
Description: Raw data from pest monitoring/traps can be correlated with environmental factors such as temperature, growing degree day etc. to get useful insights about the pest phenology. This package pulls temperature data from the California Irrigation Management Information System ('CIMIS', <https://cimis.water.ca.gov>) or the 'Daymet' application programming interface ('API', <https://daymet.ornl.gov>) for a user-specified time period and calculates cumulative growing degree-days. Users provide pest development thresholds (lower and upper temperatures) and the geographic coordinates of the trap location to track emergence and phenology.
Authors: Santosh Bhandari [aut, cre]
Maintainer: Santosh Bhandari <[email protected]>
License: MIT + file LICENSE
Version: 0.1.0
Built: 2026-05-20 13:45:36 UTC
Source: https://github.com/cran/TrackTrap

Help Index

Calculate cumulative degree-days for a pest using Daymet API or CIMIS CSV FILE

Description

Calculate cumulative degree-days for a pest using Daymet API or CIMIS CSV FILE

Usage

calc_pest_phenology(
  trap_data,
  pest = NULL,
  lat = NULL,
  lon = NULL,
  custom_lower = NULL,
  custom_upper = NULL,
  cimis_csv = NULL
)

Arguments

trap_data

A data frame containing date and trap_counts.
pest

A string representing the pest code (e.g., "OLFF", "NOW"). See pest_thresholds dataset.
lat

Latitude of the trap location (numeric).
lon

Longitude of the trap location (numeric).
custom_lower

Optional. Override the database with a custom lower threshold.
custom_upper

Optional. Override the database with a custom upper threshold.
cimis_csv

Optional. File path to a manually downloaded CIMIS daily CSV file.

Value

A data frame joining the trap data with daily temperatures and cumulative degree-days.

Examples

# Create mock trap data for testing
  trap_df <- data.frame(date = as.Date(c("2024-05-01", "2024-05-08")),
                        trap_counts = c(2, 14))

  # Calculate phenology using Daymet API
  results <- calc_pest_phenology(trap_df, pest = "OLFF", lat = 38.5, lon = -121.8)

Pest Developmental Thresholds

Description

A dataset containing the lower and upper developmental temperature thresholds (in Fahrenheit) for common agricultural pests in California.

Usage

pest_thresholds

Format

A data frame with 5 rows and 4 variables:

pest_code

Short abbreviation for the pest (e.g., OLFF, NOW)

pest_name

Common name of the pest

lower_thresh

Lower developmental temperature threshold (°F)

upper_thresh

Upper developmental temperature threshold (°F)

Plot Cumulative Degree-Days against Trap Counts

Description

Plot Cumulative Degree-Days against Trap Counts

Usage

plot_phenology_trend(df, save_plot = FALSE)

Arguments

df

The data frame outputted by calc_pest_phenology.
save_plot

Logical. If TRUE, saves the plot to your working directory.

Value

A ggplot object.