Package: SpaCCI
Type: Package
Title: Spatially Aware Cell-Cell Interaction Analysis
Version: 1.0.5
Date: 2026-02-26
Authors@R: person(given = "Li-Ting",
                  family = "Ku",
                  role = c("aut", "cre"),
                  email = "lku@mdanderson.org")
Maintainer: Li-Ting Ku <lku@mdanderson.org>
Description: Provides tools for analyzing spatial cell-cell
        interactions based on ligand-receptor pairs, including
        functions for local, regional, and global analysis using
        spatial transcriptomics data. Integrates with databases like
        'CellChat' <https://github.com/jinworks/CellChat>,
        'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker'
        <https://www.rna-society.org/cellinker/>, 'ICELLNET'
        <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB'
        <https://humanconnectome.org/software/connectomedb/> to
        identify ligand-receptor pairs, visualize interactions through
        heatmaps, chord diagrams, and infer interactions on different
        spatial scales.
License: GPL (>= 2)
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 1.0.13), Seurat (>= 4.0.0), nnls, ggrepel, pheatmap,
        circlize (>= 0.4.12), Matrix, dplyr, patchwork, grDevices,
        reshape2, graphics, ggplot2, FNN, rlang
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.3.3
NeedsCompilation: yes
Packaged: 2026-07-04 16:40:35 UTC; root
Author: Li-Ting Ku [aut, cre]
Repository: https://cran.r-universe.dev
Date/Publication: 2026-02-27 08:30:23 UTC
RemoteUrl: https://github.com/cran/SpaCCI
RemoteRef: HEAD
RemoteSha: 5d366077cdd40bf954a165fc2c1dfe115e3657df