# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "SlideCNA" in publications use:' type: software license: GPL-3.0-or-later title: 'SlideCNA: Calls Copy Number Alterations from Slide-Seq Data' version: 0.1.0 doi: 10.32614/CRAN.package.SlideCNA abstract: This takes spatial single-cell-type RNA-seq data (specifically designed for Slide-seq v2) that calls copy number alterations (CNAs) using pseudo-spatial binning, clusters cellular units (e.g. beads) based on CNA profile, and visualizes spatial CNA patterns. Documentation about 'SlideCNA' is included in the the pre-print by Zhang et al. (2022, ). The package 'enrichR' (>= 3.0), conditionally used to annotate SlideCNA-determined clusters with gene ontology terms, can be installed at or with install_github("wjawaid/enrichR"). authors: - family-names: Zhang given-names: Diane email: dkzhang711@gmail.com orcid: https://orcid.org/0000-0002-0268-4413 - family-names: Klughammer given-names: Johanna email: klughammer@genzentrum.lmu.de orcid: https://orcid.org/0000-0002-3628-9278 - family-names: Watter given-names: Jan email: jan.watter@gmail.com orcid: https://orcid.org/0000-0001-7519-731X repository: https://CRAN.R-project.org/package=SlideCNA date-released: '2025-01-23' contact: - family-names: Zhang given-names: Diane email: dkzhang711@gmail.com orcid: https://orcid.org/0000-0002-0268-4413