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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SiFINeT" in publications use:'
type: software
license: GPL-3.0-only
title: 'SiFINeT: Single Cell Feature Identification with Network Topology'
version: '1.13'
doi: 10.1093/nar/gkae307
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SiFINeT
abstract: 'Cluster-independent method based on topology structure of gene co-expression
  network for identifying feature gene sets, extracting cellular subpopulations, and
  elucidating intrinsic relationships among these subpopulations. Without prior cell
  clustering, SifiNet circumvents potential inaccuracies in clustering that may influence
  subsequent analyses. This method is introduced in Qi Gao, Zhicheng Ji, Liuyang Wang,
  Kouros Owzar, Qi-Jing Li, Cliburn Chan, Jichun Xie "SifiNet: a robust and accurate
  method to identify feature gene sets and annotate cells" (2024) <https://doi.org/10.1093/nar/gkae307>.'
authors:
- family-names: Gao
  given-names: Qi
  email: gqi@med.umich.edu
preferred-citation:
  type: article
  title: 'SifiNet: A robust and accurate method to identify feature gene sets and
    annotate cells'
  authors:
  - family-names: Gao
    given-names: Qi
    email: gqi@med.umich.edu
  - family-names: Ji
    given-names: Zhicheng
  - family-names: Wang
    given-names: Liuyang
  - family-names: Owzar
    given-names: Kouros
  - family-names: Li
    given-names: Qi-Jing
  - family-names: Chan
    given-names: Cliburn
  - family-names: Xie
    given-names: Jichun
  journal: Nucleic Acids Research
  volume: '52'
  issue: '9'
  year: '2024'
  doi: 10.1093/nar/gkae307
  start: e46
repository: https://CRAN.R-project.org/package=SiFINeT
date-released: '2025-01-01'
contact:
- family-names: Gao
  given-names: Qi
  email: gqi@med.umich.edu