Package: SiFINeT
Type: Package
Title: Single Cell Feature Identification with Network Topology
Version: 1.13
Date: 2025-01-01
Author: Qi Gao [aut, cre]
Maintainer: Qi Gao <gqi@med.umich.edu>
Authors@R: person(given = "Qi",
                  family = "Gao",
                  role = c("aut", "cre"),
                  email = "gqi@med.umich.edu")
Description: Cluster-independent method based on topology structure of
        gene co-expression network for identifying feature gene sets,
        extracting cellular subpopulations, and elucidating intrinsic
        relationships among these subpopulations. Without prior cell
        clustering, SifiNet circumvents potential inaccuracies in
        clustering that may influence subsequent analyses. This method
        is introduced in Qi Gao, Zhicheng Ji, Liuyang Wang, Kouros
        Owzar, Qi-Jing Li, Cliburn Chan, Jichun Xie "SifiNet: a robust
        and accurate method to identify feature gene sets and annotate
        cells" (2024) <doi:10.1093/nar/gkae307>.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.1
NeedsCompilation: yes
BuildVignettes: yes
VignetteBuilder: knitr
Depends: R (>= 3.6.0), methods, utils, stats
Imports: Rcpp (>= 1.0.9), quantreg (>= 5.94), igraph (>= 1.3.5), Matrix
        (>= 1.5-1), ggraph (>= 2.0.6), ggplot2 (>= 3.3.6),
Suggests: rmarkdown (>= 2.20), knitr (>= 1.42)
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2026-06-15 10:44:09 UTC; root
Repository: https://cran.r-universe.dev
Date/Publication: 2025-01-16 15:10:05 UTC
RemoteUrl: https://github.com/cran/SiFINeT
RemoteRef: HEAD
RemoteSha: 2981dc15864a327aeac7d5ae109f102f7fb99426