Package: SVAlignR
Version: 0.10.5
Date: 2026-09-25
Title: Recovering Structure of Long Molecules from Structural Variation
        Data
Authors@R: person(given = c("Kevin", "R."), family = "Coombes",
                  role = c("aut", "cre"), email = "krc@silicovore.com")
Description: Implements a method to combine multiple levels of multiple
        sequence alignment to uncover the structure of complex DNA
        rearrangements.
Depends: R (>= 4.4)
Imports: methods, graphics, grDevices, oompaBase, Biostrings,
        NameNeedle, dendextend, ape, stringr, igraph, Polychrome,
        colorspace
Suggests: msa, viridisLite, R.rsp, knitr, rmarkdown
VignetteBuilder: R.rsp
License: Apache License (== 2.0)
URL: http://silicovore.com/OOMPA/clonefinder.html
NeedsCompilation: no
Packaged: 2026-09-25 18:54:37 UTC; root
Author: Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Config/pak/sysreqs: zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2026-09-25 18:44:39 UTC
RemoteUrl: https://github.com/cran/SVAlignR
RemoteRef: HEAD
RemoteSha: e87320a997a749b2d8b003b986360caaf50c29fb