Package: SMASH
Type: Package
Title: Subclone Multiplicity Allocation and Somatic Heterogeneity
Version: 1.0.0
Date: 2025-02-07
Authors@R: 
	person("Paul","Little",
		email = "pllittle321@gmail.com",
		role = c("aut","cre"))
Description: Cluster user-supplied somatic read counts with
        corresponding allele-specific copy number and tumor purity to
        infer feasible underlying intra-tumor heterogeneity in terms of
        number of subclones, multiplicity, and allocation (Little et
        al. (2019) <doi:10.1186/s13073-019-0643-9>).
License: GPL (>= 3)
Imports: Rcpp, stats, smarter, reshape2, ggplot2
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
RoxygenNote: 7.2.3
Suggests: knitr, devtools
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2026-07-08 07:55:36 UTC; root
Author: Paul Little [aut, cre]
Maintainer: Paul Little <pllittle321@gmail.com>
Repository: https://cran.r-universe.dev
Date/Publication: 2025-02-27 16:40:06 UTC
RemoteUrl: https://github.com/cran/SMASH
RemoteRef: HEAD
RemoteSha: f73c87275840edb5e66e8d389492dbedea8e84af