Package 'Rveg'

Title: Digitization of Phytosociological Relevés
Description: Simple and fast tool for transforming phytosociological vegetation data into digital form for the following analysis. Danihelka, Chrtek, and Kaplan (2012, ISSN:00327786). Hennekens, and Schaminée (2001) <doi:10.2307/3237010>. Tichý (2002) <doi:10.1111/j.1654-1103.2002.tb02069.x>. Wickham, François, Henry, Müller (2022) <https://CRAN.R-project.org/package=dplyr>.
Authors: Přemysl Král [aut, cre] , Jan Douda [aut]
Maintainer: Přemysl Král <[email protected]>
License: GPL (>= 3)
Version: 0.1.6
Built: 2024-12-23 06:49:22 UTC
Source: CRAN

Help Index

addReleve

Description

Digitizing and editing your releves - Rveg database

Usage

addReleve(
  DATABASE = "NEW",
  SAVE = "default",
  checklist = "default",
  extrahead = NULL,
  start = TRUE
)

Arguments

DATABASE

name of csv files for releve table and header - database
SAVE

name of exporting database
checklist

custom checklist
extrahead

extra rows in header
start

Boolean to start immediately digitizing first releve

Value

export two csv files, one for releve and one for header (Rveg database)

Examples

## NOT RUN
if (interactive()) {
  addReleve()
}

CreateChecklist

Description

Create a custom checklist with species ShortNames

Usage

CreateChecklist(specieslist, export = "export")

Arguments

specieslist

path to list of species
export

name of your exported checklist file

Value

txt file used as checklist in Rveg functions

Examples

## NOT RUN
if (interactive()) {
CreateChecklist(specieslist = paste0(path.package("Rveg"),
"/extdata/SpeciesList"))
}

RvegCheck

Description

Checking your DATABASE for duplicity and allowing to export table with full species name (not Rveg editable anymore).

Usage

RvegCheck(
  DATABASE,
  fullnames = FALSE,
  export = "export",
  checklist = "default"
)

Arguments

DATABASE

name of csv files for releve table and header - database
fullnames

logical value if you want to add fullnames to the database
export

name of exporting database
checklist

checklist used to match shortnames with species name

Value

Export csv file releve table

Examples

## NOT RUN
if (interactive()) {
  RvegCheck(DATABASE = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

RvegCombine

Description

Merging species or layers in the database

Usage

RvegCombine(database, export = "export", checklist = "default")

Arguments

database

name of the loading database
export

name of the exported database
checklist

checklist to be used

Value

export two csv files, one for releve and one for header

Examples

## NOT RUN
if (interactive()) {
  RvegCombine(database = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

RvegLoad

Description

Reading your Rveg database

Usage

RvegLoad(DATABASE = "default", CustomScale = FALSE, checklist = "default")

Arguments

DATABASE

name of Rveg database
CustomScale

logical values if different than predefined scale was used during the database creation
checklist

used checklist

Value

read the database in one object

Examples

RvegLoad()

RvegMerge

Description

Merge two Rveg databases

Usage

RvegMerge(x, y, save = "export_merge", head = TRUE)

Arguments

x

name of first database
y

name of second database
save

name of exported databes
head

logical value if want to merge header

Value

export two csv files, one for releve and one for header

Examples

## NOT RUN
if (interactive()) {
  RvegMerge(x = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ), y = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
  read.csv("export_mergeREL.csv", row.names = 1)
}

RvegToJuice

Description

Export Rveg database to Juice software compatible format

Usage

RvegToJuice(Data, checklist = "default", export = "export")

Arguments

Data

name of your Rveg database
checklist

path to your custom species checklist
export

name of your exported csv file

Value

csv file which is readible by Juice

Examples

## NOT RUN
if (interactive()) {
  RvegToJuice(Data = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

RvegToTv

Description

Export Turboveg csv compatible file

Usage

RvegToTv(database, export = "export", ver = 3, checklist = "default")

Arguments

database

path to Rveg database
export

name of your exported Tv file
ver

version of TURBOVEG
checklist

checklist to match Fullnames

Value

csv file

Examples

## NOT RUN
if (interactive()) {
  RvegToTv(database = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

TvToRveg

Description

Export Turboveg csv file to Rveg database compatible format

Usage

TvToRveg(tv, export = "export", checklist = "default")

Arguments

tv

path to Turboveg csv export
export

name of your exported database
checklist

checklist used to match shortnames with species name

Value

csv file

Examples

## NOT RUN
if (interactive()) {
  TvToRveg(tv = paste0(
    path.package("Rveg"),
    "/extdata/tvexport.csv"
  ))
}