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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "RiskyCNV" in publications use:'
type: software
license: MIT
title: 'RiskyCNV: Risk Analysis of Genomic Copy Number Variation'
version: 0.1.0
abstract: Provides a complete seven-step workflow for copy number variation (CNV)
  analysis applicable to any disease or condition where samples with genomic copy
  number data is available. Supports built-in grading and risk stratification presets
  for seven major cancers (viz. prostate, breast, colorectal, lung, cervical, lymphoma,
  melanoma) based on clinically validated systems including ISUP Grade Groups, Nottingham
  Grading System, Dukes staging, IASLC TNM, FIGO, Ann Arbor/Lugano classification,
  and Breslow depth. Generalizable to other disease types. An automatic mode derives
  a normalised Risk Score from the data using min-max normalisation and adaptive binning.
  Custom user-defined thresholds are supported for any other disease type. Downstream
  functions for CNV aberration detection, recurrence analysis, gene annotation, CNV
  matrix generation, and CNV-RNA expression correlation are disease-type agnostic.
authors:
- family-names: Palaniappan
  given-names: Ashok
  email: apalania@scbt.sastra.edu
  orcid: https://orcid.org/0000-0003-2841-9527
- family-names: Ramesh
  given-names: Priyanka
- family-names: Titus
  given-names: Ida
- family-names: Muthamilselvan
  given-names: Sangeetha
repository: https://cran.r-universe.dev
commit: 35b5ea4dbc08605d146fe9732c98c316e5deef60
date-released: '2026-06-05'
contact:
- family-names: Palaniappan
  given-names: Ashok
  email: apalania@scbt.sastra.edu
  orcid: https://orcid.org/0000-0003-2841-9527