library(ReporterScore)
#> [38;5;246mIf you use the ReporterScore package in published research, please cite:
#>
#> Chen Peng, Qiong Chen, Shangjin Tan, Xiaotao Shen, Chao Jiang, Generalized reporter score-based enrichment analysis for omics data, Briefings in Bioinformatics, Volume 25, Issue 3, May 2024, bbae116, https://doi.org/10.1093/bib/bbae116 [39mGeneralized Reporter Score-based Enrichment Analysis for Omics Data
To cite ‘ReporterScore’ in publications use:
C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized Reporter Score-based Enrichment Analysis for Omics Data. Briefings in Bioinformatics (2024). https://doi.org/10.1093/bib/bbae116.
Please go to https://github.com/Asa12138/ReporterScore for more details.
If you have any questions/issues, please visit github issue tracker.
Here is the output of sessionInfo() on the system on which this document was compiled:
sessionInfo()
#> R version 4.4.1 (2024-06-14)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 24.04.1 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=C
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] ReporterScore_0.1.8 rmarkdown_2.28
#>
#> loaded via a namespace (and not attached):
#> [1] vctrs_0.6.5 cli_3.6.3 knitr_1.48 rlang_1.1.4
#> [5] xfun_0.47 generics_0.1.3 jsonlite_1.8.9 glue_1.7.0
#> [9] pcutils_0.2.6 colorspace_2.1-1 buildtools_1.0.0 htmltools_0.5.8.1
#> [13] maketools_1.3.0 sys_3.4.2 sass_0.4.9 scales_1.3.0
#> [17] fansi_1.0.6 grid_4.4.1 munsell_0.5.1 tibble_3.2.1
#> [21] evaluate_1.0.0 jquerylib_0.1.4 fastmap_1.2.0 yaml_2.3.10
#> [25] lifecycle_1.0.4 compiler_4.4.1 dplyr_1.1.4 pkgconfig_2.0.3
#> [29] digest_0.6.37 R6_2.5.1 tidyselect_1.2.1 utf8_1.2.4
#> [33] pillar_1.9.0 magrittr_2.0.3 bslib_0.8.0 gtable_0.3.5
#> [37] tools_4.4.1 ggplot2_3.5.1 cachem_1.1.0Patil, K. R. & Nielsen, J. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci U S A 102, 2685–2689 (2005).
L. Liu, R. Zhu, D. Wu, Misuse of reporter score in microbial enrichment analysis. iMeta. 2, e95 (2023).