Package: Rduckhts
Title: 'DuckDB' High Throughput Sequencing File Formats Reader
        Extension
Version: 2.0.2.0.1.1
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure",
    email = "sounkoutoure@gmail.com",
    role = c("aut", "cre")),
    person(given = "Ryan", family = "Ward",
    email = "ryan@nurture.bio",
    role = "aut", comment = "GenBank reader and FASTA converter"),
    person("Nurture Bio", role = "cph", comment = "GenBank reader and FASTA converter"),
    person(given = "James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan, Andrew Whitwham,Thomas Keane , Robert M Davies", role = "ctb", comment = "Htslib Authors"),
    person("DuckHTS Contributors", role = "cph", comment = "DuckHTS DuckDB extension (MIT)"),
    person("RBCFTools Authors", role = "cph", comment = "Copyright notice in bcf_reader.c"),
    person("Genome Research Ltd", role = "cph", comment = "HTSlib, htscodecs and the bcftools filter engine (Petr Danecek)"),
    person("Broad Institute", role = "cph", comment = "Portions of HTSlib"),
    person("Massachusetts Institute of Technology", role = "cph", comment = "Portions of HTSlib"),
    person("Medical Research Council", role = "cph", comment = "Portions of HTSlib CRAM code"),
    person("Attractive Chaos", role = "cph", comment = "khash, kseq and related HTSlib and cgranges headers"),
    person("Dana-Farber Cancer Institute", role = "cph", comment = "cgranges"),
    person(given = "Brent", family = "Pedersen", role = "cph", comment = "Original author of mosdepth and Somalier"),
    person(given = "Giulio", family = "Genovese", email = "giulio.genovese@gmail.com", role = "cph", comment = "Author of BCFTools munge,score,liftover plugins"),
    person("GENOMICS plc", role = "cph", comment = "VariantKey and RegionKey C API"),
    person(given = "Nicola", family = "Asuni", role = "cph", comment = "Author of the VariantKey and RegionKey C API"),
    person(given = "Devon", family = "Ryan", role = "cph", comment = "Author of libBigWig"),
    person("Stichting DuckDB Foundation", role = "cph", comment = "DuckDB C extension API headers")
    )
Description: Bundles the 'duckhts' 'DuckDB' extension for reading High
        Throughput Sequencing file formats with 'DuckDB'. The 'DuckDB'
        C extension API <https://duckdb.org/docs/stable/clients/c/api>
        and its 'htslib' dependency are compiled from vendored sources
        during package installation. James K Bonfield and co-authors
        (2021) <doi:10.1093/gigascience/giab007>. VariantKey /
        RegionKey support follows Nicola Asuni (2018)
        <doi:10.1101/473744>.
License: GPL (>= 2)
Copyright: See inst/COPYRIGHT
Encoding: UTF-8
SystemRequirements: GNU make, cmake, zlib, libbz2, liblzma, libcurl,
        openssl (development headers)
NeedsCompilation: yes
Depends: R (>= 4.4.0)
Imports: DBI, duckdb (>= 1.5.0), methods, utils
Suggests: Rtinycc, tinytest
URL: https://github.com/RGenomicsETL/duckhts,
        https://rgenomicsetl.r-universe.dev/Rduckhts
BugReports: https://github.com/RGenomicsETL/duckhts/issues
Config/roxygen2/version: 8.0.0
Packaged: 2026-10-28 19:19:24 UTC; root
Author: Sounkou Mahamane Toure [aut, cre], Ryan Ward [aut] (GenBank
        reader and FASTA converter), Nurture Bio [cph] (GenBank reader
        and FASTA converter), James K Bonfield, John Marshall,Petr
        Danecek ,Heng Li , Valeriu Ohan, Andrew Whitwham,Thomas Keane ,
        Robert M Davies [ctb] (Htslib Authors), DuckHTS Contributors
        [cph] (DuckHTS DuckDB extension (MIT)), RBCFTools Authors [cph]
        (Copyright notice in bcf_reader.c), Genome Research Ltd [cph]
        (HTSlib, htscodecs and the bcftools filter engine (Petr
        Danecek)), Broad Institute [cph] (Portions of HTSlib),
        Massachusetts Institute of Technology [cph] (Portions of
        HTSlib), Medical Research Council [cph] (Portions of HTSlib
        CRAM code), Attractive Chaos [cph] (khash, kseq and related
        HTSlib and cgranges headers), Dana-Farber Cancer Institute
        [cph] (cgranges), Brent Pedersen [cph] (Original author of
        mosdepth and Somalier), Giulio Genovese [cph] (Author of
        BCFTools munge,score,liftover plugins), GENOMICS plc [cph]
        (VariantKey and RegionKey C API), Nicola Asuni [cph] (Author of
        the VariantKey and RegionKey C API), Devon Ryan [cph] (Author
        of libBigWig), Stichting DuckDB Foundation [cph] (DuckDB C
        extension API headers)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Config/pak/sysreqs: cmake make libbz2-dev liblzma-dev libssl-dev
        zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2026-10-28 10:20:08 UTC
RemoteUrl: https://github.com/cran/Rduckhts
RemoteRef: HEAD
RemoteSha: ec493e250f6552ad683a621818848a0a836867ed