Changes in version 1.4.0 (2025-01-29) BUG FIXES o Bug fixes in createCDB, decompose and compose o Previous version required data.table >= 1.14.3 but this was not listed as a dependency, now it works with data.table >= 1.12.8 o Modifications to display of filenames in loadSNOMED messages to correct CRAN errors in Windows build NEW FEATURES o Option to omit metadata in codelist export CHANGES o New function addComposeLookupToCDB replaces createComposeLookup to add the composition lookup table to the CDB. The composition lookup table no longer needs to be supplied as a separate argument to compose o Performance improvements for decompose and relatedConcepts Changes in version 1.3 (2024-10-28) BUG FIXES o Ensure that 'description' returns a 'type' column if there are 0 rows and include_synonyms = TRUE o Ensure that 'description' returns only one Fully Specified Name per concept, and 'semanticType' returns only a single result per concept NEW FEATURES o New function 'createTransitive' to generate a transitive closure table containing all ancestor-descendant pairs. This makes subsequent ancestor / descendant searches quicker o Revised ancestor and descendant functions to be able to use a transitive closure table o New function 'addInactiveConcepts' to add inactive concepts to codelists, using the history and query tables o New functions 'createCDB' and 'createMiADECDB' to generate a concept database and lookups for named entity recognition o New function 'createDisambiguationTrainer' to use longer SNOMED CT terms to create texts to help train disambiguation of short terms. o New functions 'decompose', 'batchDecompose' and 'createComposeLookup' to create a lookup table for composition of SNOMED CT concepts o New function 'compose' to select a detailed SNOMED CT concept based on a general concept and separate concepts for attributes such as body site Changes in version 1.2 (2023-04-18) BUG FIXES o as.integer64.SNOMEDconcept now allows additional optional arguments, like the generic as.integer64 function NEW FEATURES o loadSNOMED also optionally loads history and query tables from a SNOMED CT distribution o New function addInactiveConcepts to add inactive concepts to codelists, using the history and query tables Changes in version 1.1 BUG FIXES o Showing a concept description caused an error if there were multiple descriptions for a concept and duplicate concepts in the SNOMEDconcept vector o SNOMEDcodelist timestamps were set to the user-supplied date instead of the system time o Error on exporting SNOMEDcodelists with single row maps that had NULL values. Instead the NULLs are now zero-length character vectors, which can be exported correctly with fwrite. o Ensure that SNOMED environment is passed from htmlCodelistHierarchy to showCodelistHierarchy o Corrected bug in hasAttribute when SNOMED RELATIONSHIP table contains duplicate source-type-destination triples (e.g. if some are inactive) CHANGES o New vignette 'customHierarchy.Rmd' explaining how to create a custom SNOMED-like database to enable the hierarchical view o Vignette shows how to obtain 'History of' terms for phenotyping algorithms Changes in version 1.0 (2021-11-28) NEW FEATURES o New getMaps function to map a codelist to another terminology system o New htmlCodelistHierarchy function to create an interactive HTML file to explore a codelist o SNOMED CT simple reference sets included in the SNOMED environment, with new function getRefset o Function to load a mapping table from the NHS Digital data migration pack (loadREADMAPS), for mapping to Read V2 and CTV3 CHANGES o SNOMEDcodelist S3 data type has been redesigned to include metadata as well as accommodate different formats of codelists o SNOMEDcodelist no longer includes descendants by default o SNOMED environment now includes mapping tables and simple refsets o Updated method of displaying SNOMED CT codelists Changes in version 0.2 (2021-07-19) o Initial release