The R package RNAseqNet can be used to
infer networks from RNA-seq expression data. The count data are given as
a n × p matrix in
which n is the number of
individuals and p the number
of genes. This matrix is denoted by X in the sequel.
Eventually, the RNA-seq dataset is complemented with an n′ × d matrix, Y which can be used to impute missing individuals in X as described in [Imbert et al., 2018].
The RNAseqNet User’s Guide can be opened with:
The location of the source file is given by:
Imbert, A., Valsesia, A., Le Gall, C., Armenise, C., Lefebvre, G., Gourraud, P.A., Viguerie, N. and Villa-Vialaneix, N. (2018) Multiple hot-deck imputation for network inference from RNA sequencing data. Bioinformatics. DOI: http://dx.doi.org/10.1093/bioinformatics/btx819.
## R version 4.4.2 (2024-10-31)
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