Package: RHybridFinder
Type: Package
Title: Identification of Hybrid Peptides in Immunopeptidomic Analyses
Version: 0.2.0
Authors@R: c(person("Frederic", "Saab", role = c("aut", "cre"),
                      email = "frederic.saab@umontreal.ca"),
               person("Peter", "Kubiniok", role = "aut") )
Maintainer: Frederic Saab <frederic.saab@umontreal.ca>
Description: Tool for the analysis Mass Spectrometry (MS) data in the
        context of immunopeptidomic analysis for the identification of
        hybrid peptides and the predictions of binding affinity of all
        peptides using 'netMHCpan' <doi:10.1093/nar/gkaa379> while
        providing a summary of the netMHCpan output. 'RHybridFinder'
        (RHF) is destined for researchers who are looking to analyze
        their MS data for the purpose of identification of potential
        spliced peptides. This package, developed mainly in base R, is
        based on the workflow published by Faridi et al. in 2018
        <doi:10.1126/sciimmunol.aar3947>.
Imports: doParallel, foreach, seqinr
Depends: R (>= 3.5.0)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
NeedsCompilation: no
LazyData: True
LazyDataCompression: bzip2
Packaged: 2026-07-13 08:25:12 UTC; root
Author: Frederic Saab [aut, cre], Peter Kubiniok [aut]
Repository: https://cran.r-universe.dev
Date/Publication: 2021-08-17 15:30:24 UTC
RemoteUrl: https://github.com/cran/RHybridFinder
RemoteRef: HEAD
RemoteSha: 3a89236619fc5f249a816ae80fd4ea35daf251df