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type: software
license: GPL-2.0-or-later
title: 'QAEnsemble: Ensemble Quadratic and Affine Invariant Markov Chain Monte Carlo'
version: 1.0.0
doi: 10.32614/CRAN.package.QAEnsemble
abstract: The Ensemble Quadratic and Affine Invariant Markov chain Monte Carlo algorithms
  provide an efficient way to perform Bayesian inference in difficult parameter space
  geometries. The Ensemble Quadratic Monte Carlo algorithm was developed by Militzer
  (2023) <https://doi.org/10.3847/1538-4357/ace1f1>. The Ensemble Affine Invariant
  algorithm was developed by Goodman and Weare (2010) <https://doi.org/10.2140/camcos.2010.5.65>
  and it was implemented in Python by Foreman-Mackey et al (2013) <https://doi.org/10.48550/arXiv.1202.3665>.
  The Quadratic Monte Carlo method was shown to perform better than the Affine Invariant
  method in the paper by Militzer (2023) <https://doi.org/10.3847/1538-4357/ace1f1>
  and the Quadratic Monte Carlo method is the default method used. The Chen-Shao Highest
  Posterior Density Estimation algorithm is used for obtaining credible intervals
  and the potential scale reduction factor diagnostic is used for checking the convergence
  of the chains.
authors:
- family-names: Roda
  given-names: Weston
  email: wroda@ihe.ca
  orcid: https://orcid.org/0000-0001-7200-7605
- family-names: Hempel
  given-names: Karsten
  email: khempel@ihe.ca
  orcid: https://orcid.org/0000-0003-3273-4247
- family-names: Katwyk
  given-names: Sasha
  name-particle: van
  email: skatwyk@ihe.ca
  orcid: https://orcid.org/0000-0003-3026-2063
- family-names: Ayabina
  given-names: Diepreye
  email: dayabina@ihe.ca
  orcid: https://orcid.org/0000-0002-7005-6734
repository: https://CRAN.R-project.org/package=QAEnsemble
date-released: '2025-01-09'
contact:
- family-names: Roda
  given-names: Weston
  email: wroda@ihe.ca
  orcid: https://orcid.org/0000-0001-7200-7605