Package: PlasmaMutationDetector
Type: Package
Title: Tumor Mutation Detection in Plasma
Version: 1.7.2
Date: 2018-05-16
Author: Yves Rozenholc, Nicolas Pécuchet, Pierre Laurent-Puig
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>
Description: Aims at detecting single nucleotide variation (SNV) and
        insertion/deletion (INDEL) in circulating tumor DNA (ctDNA),
        used as a surrogate marker for tumor, at each base position of
        an Next Generation Sequencing (NGS) analysis. Mutations are
        assessed by comparing the minor-allele frequency at each
        position to the measured PER in control samples.
License: MIT + file LICENSE
Imports: S4Vectors (>= 0.16.0), Rsamtools (>= 1.30.0), rtracklayer (>=
        1.38.0), robustbase (>= 0.92-8), SummarizedExperiment (>=
        1.8.0)
Depends: R (>= 3.4.0), ggplot2 (>= 2.2.0), grid (>= 3.4.0),
        GenomicRanges (>= 1.30.0), VariantAnnotation (>= 1.24.0)
Encoding: UTF-8
RoxygenNote: 6.0.1
LazyData: true
NeedsCompilation: no
Packaged: 2026-10-03 08:52:36 UTC; root
Config/pak/sysreqs: libbz2-dev liblzma-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2018-06-11 06:43:09 UTC
RemoteUrl: https://github.com/cran/PlasmaMutationDetector
RemoteRef: HEAD
RemoteSha: 9a5b641f806d9f6b66411a71205ebd1d83f4ee75