# ------------------------------------------------ # CITATION.cff file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # ------------------------------------------------ cff-version: 1.2.0 message: 'To cite package "PathoFMPred" in publications use:' type: software license: MIT title: 'PathoFMPred: Tumour Feature Models from Pathology Representations' version: 0.1.0 abstract: Builds and applies portable cancer-specific partial least squares (PLS) regression and partial least squares with linear discriminant analysis (PLS-LDA) model collections from pathology foundation-model representations. Feature and outcome tables are linked by explicit patient identifiers, repeated slide rows are pooled at patient level, and model development uses nested cross-validation before final fitting. The source package contains no fitted foundation-model parameters, embeddings, patient-level data, or atlas registry. Users may download a separately licensed, checksum-verified Prov-GigaPath collection after installation, or load authorized collections from local files. Outputs are research estimates without external-validation or clinical-use claims. The methods build on Wold et al. (2001) and Barker and Rayens (2003) . authors: - family-names: Ismail given-names: Aamilah - family-names: Ocharo given-names: Martin - family-names: Canarutto given-names: Giulia - family-names: Mohamed given-names: Moussa Kassim email: moussa.kassim@icgeb.org - family-names: Ahmed given-names: Dalia email: dalia.ahmed@icgeb.org - family-names: Price given-names: Brendon - family-names: Ojo given-names: Dupe email: dupe.ojo@icgeb.org - family-names: Nweke given-names: Ekene Emmanuel - family-names: Vignoli given-names: Alessia email: vignoli@cerm.unifi.it - family-names: Piazza given-names: Silvano - family-names: Gupta given-names: Dinesh - family-names: Tenori given-names: Leonardo email: tenori@cerm.unifi.it - family-names: Cacciatore given-names: Stefano email: tkcaccia@gmail.com repository: https://cran.r-universe.dev repository-code: https://github.com/tkcaccia/PathoFMPred commit: 68a23ae70d55e7cacc9e7e29713573627866b2a3 url: https://github.com/tkcaccia/PathoFMPred date-released: '2026-11-12' contact: - family-names: Cacciatore given-names: Stefano email: tkcaccia@gmail.com