, Rhenz Hannah Santos
[aut] , Jericho Ivan
Pineda [aut] , Lourdes
Alvarez [aut, ths] ,
Chester Deocaris [aut, ths, cre]
| Title: | Image-Based Identification of Color Based on Rayner (1970) Terminology and Known Fungal Pigments |
|---|---|
| Description: | Image-based color matching using the "Mycological Colour Chart" by Rayner (1970, ISBN:9780851980263) and its associated fungal pigments. This package will assist mycologists in identifying color during morphological analysis. |
| Authors: | Niña Rose Zapanta [aut]
, Rhenz Hannah Santos
[aut] , Jericho Ivan
Pineda [aut] , Lourdes
Alvarez [aut, ths] ,
Chester Deocaris [aut, ths, cre]
|
| Maintainer: | Chester Deocaris <[email protected]> |
| License: | GPL-2 |
| Version: | 0.2.0 |
| Built: | 2024-12-05 06:51:47 UTC |
| Source: | CRAN |
Generates results for associated fungal pigments / class of compounds based on the CIELAB color matches
fungalpigments.LAB(fungi, distance.method = "euclidean")fungalpigments.LAB(fungi, distance.method = "euclidean")
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Fungal pigments, 3D LAB plot, color histogram
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
fungalpigments.LAB(system.file("fungi.png", package = "PUPMCR")) ## Not run: fungalpigments.LAB("fungi_image_format")fungalpigments.LAB(system.file("fungi.png", package = "PUPMCR")) ## Not run: fungalpigments.LAB("fungi_image_format")
Generates results for associated fungal pigments / class of compounds based on the RGB color matches
fungalpigments.RGB(fungi, distance.method = "euclidean")fungalpigments.RGB(fungi, distance.method = "euclidean")
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Fungal pigments, 3D RGB plot, color histogram
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
fungalpigments.RGB(system.file("fungi.png", package = "PUPMCR")) ## Not run: fungalpigments.RGB("fungi_image_format")fungalpigments.RGB(system.file("fungi.png", package = "PUPMCR")) ## Not run: fungalpigments.RGB("fungi_image_format")
Generates results for hue groups based on the CIELAB color matches
hue.LAB(fungi, distance.method = "euclidean")hue.LAB(fungi, distance.method = "euclidean")
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Hue groups, 3D LAB plot, color histogram
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
hue.LAB(system.file("fungi.png", package = "PUPMCR")) ## Not run: hue.LAB("fungi_image_format")hue.LAB(system.file("fungi.png", package = "PUPMCR")) ## Not run: hue.LAB("fungi_image_format")
Generates results for hue groups based on the RGB color matches
hue.RGB(fungi, distance.method = "euclidean")hue.RGB(fungi, distance.method = "euclidean")
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Hue groups, 3D RGB plot, color histogram
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
hue.RGB(system.file("fungi.png", package = "PUPMCR")) ## Not run: hue.RGB("fungi_image_format")hue.RGB(system.file("fungi.png", package = "PUPMCR")) ## Not run: hue.RGB("fungi_image_format")
Generates results for color names from the CIELAB color space
raynercolor.LAB(fungi, distance.method = "euclidean")raynercolor.LAB(fungi, distance.method = "euclidean")
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Color names, 3D LAB plot, color histogram
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
raynercolor.LAB(system.file("fungi.png", package = "PUPMCR")) ## Not run: raynercolor.LAB("fungi_image_format")raynercolor.LAB(system.file("fungi.png", package = "PUPMCR")) ## Not run: raynercolor.LAB("fungi_image_format")
Generates results for color names from the RGB color space
raynercolor.RGB(fungi, distance.method = "euclidean")raynercolor.RGB(fungi, distance.method = "euclidean")
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Color names, 3D RGB plot, color histogram
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
raynercolor.RGB(system.file("fungi.png", package = "PUPMCR")) ## Not run: raynercolor.RGB("fungi_image_format")raynercolor.RGB(system.file("fungi.png", package = "PUPMCR")) ## Not run: raynercolor.RGB("fungi_image_format")