To cite PEIMAN2 in publications use:

  Nickchi P, Mirzaie M, Baumann M, Dibavar AS, Jafari M (2022).
  “Monitoring Functional Post-Translational Modifications Using a
  Data-Driven Proteome Informatic Pipeline Based on PEIMAN2.”
  _biorXiv_, *4*(43), 1686.
  <https://www.biorxiv.org/content/10.1101/2022.11.09.515610v1>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Monitoring Functional Post-Translational Modifications Using a Data-Driven Proteome Informatic Pipeline Based on PEIMAN2},
    author = {Payman Nickchi and Mehdi Mirzaie and Marc Baumann and Amirata Saei Dibavar and Mohieddin Jafari},
    year = {2022},
    journal = {biorXiv},
    volume = {4},
    number = {43},
    pages = {1686},
    url = {https://www.biorxiv.org/content/10.1101/2022.11.09.515610v1},
  }