# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PCMBaseCpp" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'PCMBaseCpp: Fast Likelihood Calculation for Phylogenetic Comparative Models'
version: 0.1.9
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PCMBaseCpp
abstract: Provides a C++ backend for multivariate phylogenetic comparative models
  implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase'
  to enable fast and parallel likelihood calculation. Implements the pruning likelihood
  calculation algorithm described in Mitov et al. (2018) <arXiv:1809.09014>. Uses
  the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler
  (2018) <https://doi.org/10.1111/2041-210X.13136>.
authors:
- family-names: Mitov
  given-names: Venelin
  email: vmitov@gmail.com
preferred-citation:
  type: article
  title: 'Parallel Likelihood Calculation for Phylogenetic Comparative Models: the
    SPLITT C++ Library'
  authors:
  - family-names: Mitov
    given-names: Venelin
    email: vmitov@gmail.com
  - family-names: Stadler
    given-names: Tanja
  journal: Methods Ecol Evol.
  year: '2019'
  volume: '00'
  url: https://doi.org/10.1111/2041-210X.13136
  start: 1–14
repository: https://CRAN.R-project.org/package=PCMBaseCpp
repository-code: https://github.com/venelin/PCMBaseCpp
url: https://venelin.github.io
date-released: '2020-03-23'
contact:
- family-names: Mitov
  given-names: Venelin
  email: vmitov@gmail.com
references:
- type: article
  title: Fast likelihood calculation for multivariate Gaussian phylogenetic models
    with shifts
  authors:
  - family-names: Mitov
    given-names: Venelin
  - family-names: Bartoszek
    given-names: Krzysztof
  - family-names: Asimomitis
    given-names: Georgios
  - family-names: Stadler
    given-names: Tanja
  journal: Theor. Popul. Biol.
  year: '2019'
  url: https://doi.org/10.1016/j.tpb.2019.11.005
- type: article
  title: Automatic generation of evolutionary hypotheses using mixed Gaussian phylogenetic
    models
  authors:
  - family-names: Mitov
    given-names: Venelin
  - family-names: Bartoszek
    given-names: Krzysztof
  - family-names: Stadler
    given-names: Tanja
  journal: Proceedings of the National Academy of Sciences of the United States of
    America
  year: '2019'
  month: '8'
  volume: '35'
  url: https://doi.org/10.1073/pnas.1813823116
  start: '201813823'