Package: OmicNetR
Type: Package
Title: Network-Based Integration of Multi-Omics Data Using Sparse CCA
Version: 0.1.1
Authors@R: 
    person(given = "Prem Prashant",
           family = "Chaudhary",
           role = c("aut", "cre"),
           email = "chaudharyp2@nih.gov")
Author: Prem Prashant Chaudhary [aut, cre]
Maintainer: Prem Prashant Chaudhary <chaudharyp2@nih.gov>
Description: Provides an end-to-end workflow for integrative analysis
        of two omics layers using sparse canonical correlation analysis
        (sCCA), including sample alignment, feature selection, network
        edge construction, and visualization of gene-metabolite
        relationships. The underlying methods are based on penalized
        matrix decomposition and sparse CCA (Witten, Tibshirani and
        Hastie (2009) <doi:10.1093/biostatistics/kxp008>), with design
        principles inspired by multivariate integrative frameworks such
        as mixOmics (Rohart et al. (2017)
        <doi:10.1371/journal.pcbi.1005752>).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: stats, graphics, grDevices, ggplot2, igraph
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), mixOmics
VignetteBuilder: knitr
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2026-07-07 07:22:04 UTC; root
Repository: https://cran.r-universe.dev
Date/Publication: 2026-01-08 19:30:14 UTC
RemoteUrl: https://github.com/cran/OmicNetR
RemoteRef: HEAD
RemoteSha: fac20fb185158bf5649eb1a4844b462ffc80e763