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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MantaID" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'MantaID: A Machine-Learning Based Tool to Automate the Identification of Biological
  Database IDs'
version: 1.0.4
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MantaID
abstract: The number of biological databases is growing rapidly, but different databases
  use different IDs to refer to the same biological entity. The inconsistency in IDs
  impedes the integration of various types of biological data. To resolve the problem,
  we developed 'MantaID', a data-driven, machine-learning based approach that automates
  identifying IDs on a large scale. The 'MantaID' model's prediction accuracy was
  proven to be 99%, and it correctly and effectively predicted 100,000 ID entries
  within two minutes. 'MantaID' supports the discovery and exploitation of ID patterns
  from large quantities of databases. (e.g., up to 542 biological databases). An easy-to-use
  freely available open-source software R package, a user-friendly web application,
  and API were also developed for 'MantaID' to improve applicability. To our knowledge,
  'MantaID' is the first tool that enables an automatic, quick, accurate, and comprehensive
  identification of large quantities of IDs, and can therefore be used as a starting
  point to facilitate the complex assimilation and aggregation of biological data
  across diverse databases.
authors:
- family-names: Zeng
  given-names: Zhengpeng
  email: molaison@foxmail.com
  orcid: https://orcid.org/0000-0001-7919-209X
- family-names: Mao
  given-names: Longfei
  email: longfeimao99@gmail.com
  orcid: https://orcid.org/0000-0003-0759-0501
- family-names: Yu
  given-names: Feng
  email: feng_yu@hnu.edu.cn
  orcid: https://orcid.org/0000-0002-5221-281X
preferred-citation:
  type: article
  title: 'MantaID: A Machine-Learning Based Tool to Automate the Identification of
    Biological Database IDs'
  authors:
  - family-names: Zeng
    given-names: Zhengpeng
    email: molaison@foxmail.com
    orcid: https://orcid.org/0000-0001-7919-209X
  - family-names: Mao
    given-names: Longfei
    email: longfeimao99@gmail.com
    orcid: https://orcid.org/0000-0003-0759-0501
  - family-names: Yu
    given-names: Feng
    email: feng_yu@hnu.edu.cn
    orcid: https://orcid.org/0000-0002-5221-281X
  year: '2024'
  journal: DATABASE-OXFORD
repository: https://CRAN.R-project.org/package=MantaID
url: https://molaison.github.io/MantaID/
date-released: '2024-09-09'
contact:
- family-names: Zeng
  given-names: Zhengpeng
  email: molaison@foxmail.com
  orcid: https://orcid.org/0000-0001-7919-209X