Changes in version 1.1.6 (2021-01-21)                  

  - Update the packages according to R v4.0.0

                        Changes in version 1.1.5                        

  - Add the function to calculate pvalue from 2 different groups using
    regression model and allowing to correct for covariates
  - Change the way to call function and fixed bugs for plot3views

                        Changes in version 1.1.4                        

  - Fixed some incorrect descriptions in the manual.

                        Changes in version 1.1.3                        

  - Fixed bugs in plot3views for mismatching color and pattern on a plot

                        Changes in version 1.1.2                        

  - Fixed bugs in read.bed

                 Changes in version 1.1.1 (2018-06-04)                  

  - Updated and added more examples in plot3view

                        Changes in version 1.1.0                        

  - Added the function cal.pc.projection
  - Moved replace.missing to for_parallel.R from principal.component.R
  - Fixed bugs in test_plot3views.R

                        Changes in version 1.0.4                        

  - Changed URL in the CITATION file from Gitlab to CRAN
  - Changed email in the DESCRIPTION file from Gmail to Official email
  - Fixed misspelling in a manual of data

                 Changes in version 1.0.3 (2018-05-07)                  

  - Updated URLs and added details of package in the DESCRIPTION file
  - Updated manual of all functions according from CRAN's comments

                        Changes in version 1.0.2                        

  - Fixed the help file for read.bed, read.bed, fst.each.snp.hudson and
    fst.hudson.

                        Changes in version 1.0.1                        

  - Fixed the help file for cal.pc.linear and rubikclust.

                       Changes in version 1.0.0.0                       

Initial functions

  - cal.pc.linear A function for linear principal component analysis
    (PCA)
  - fst.each.snp.hudson A function for fixation index (Fst) calculation
    for all SNPs between two groups.
  - fst.hudson A function for average fixation index (Fst) calculation
    between two groups.
  - plot3views A function to create scatter plots in three views.
  - read.bed Read the binary PLINK format (BED, BIM, and FAM)
  - rubikclust A function for unsupervised clustering to detect rough
    structures and outliers.
  - write.bed Write an list of SNP object to the binary PLINK format
    (BED, BIM, and FAM)
  - xxt A function for calculating matrix multipication between a matrix
    and its transpose for large data.

Initial R data

  - simsnp Synthetic dataset containing single nucleotide polymorphisms
    (SNP)
  - sample_labels Synthetic dataset containing population labels for the
    dataset simsnp.

Initial example files

  - example_SNP.bed Synthetic dataset containing single nucleotide
    polymorphisms (SNP) in binary format
  - example_SNP.bim Simulated SNP information
  - example_SNP.fam Simulated sample information

Updates

From the initial idea, some functions were changed their names:

  - The name of function cal.PC.linear was changed to cal.pc.linear.
  - The name of function plot.3views was changed to plot3views.
  - The name of function rubikClust was changed to rubikclust.
  - The name of function XXt was changed to xxt.