Package: ImprintCapASM
Type: Package
Title: Allele-Specific Methylation Analysis for Imprinted DMR
        Diagnostics
Version: 0.1.1
Authors@R: c(person(given = "Subham", family = "Saha",
                   email = "saha_19@outlook.com",
                   role = c("aut", "cre", "cph")),
             person(given = "Francesco", family = "Cecere",
                    email = "francesco.cecerengs@gmail.com",
                    role = "aut"),
             person(given = "Frederic", family = "Brioude",
                    email = "frederic.brioude@aphp.fr",
                    role = c("aut", "fnd")))
Description: Provides functions for SNP-phased allele-specific
        methylation (ASM) analysis across the 41 canonical human
        imprinted differentially methylated regions (DMRs). Reads are
        assigned to REF or ALT alleles based on bisulfite-aware SNP
        detection, enabling diagnosis of imprinting disorders from
        whole-genome bisulfite sequencing data.
        <https://github.com/19-saha/ImprintCapASM>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: data.table, readxl, writexl, vcfR, ggplot2, Rsamtools, tools
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
SystemRequirements: samtools (>= 1.10)
VignetteBuilder: knitr
URL: https://github.com/19-saha/ImprintCapASM
BugReports: https://github.com/19-saha/ImprintCapASM/issues
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-06-30 21:31:21 UTC; root
Author: Subham Saha [aut, cre, cph], Francesco Cecere [aut], Frederic
        Brioude [aut, fnd]
Maintainer: Subham Saha <saha_19@outlook.com>
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2026-06-30 18:40:08 UTC
RemoteUrl: https://github.com/cran/ImprintCapASM
RemoteRef: HEAD
RemoteSha: af05a11d2a06e6cbe1d54612eb7c3ab108f8c5c7