# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "HaploCatcher" in publications use:' type: software license: MIT title: 'HaploCatcher: A Predictive Haplotyping Package' version: 2.0.1 doi: 10.32614/CRAN.package.HaploCatcher abstract: Used for predicting a genotype's allelic state at a specific locus/QTL/gene. This is accomplished by using both a genotype matrix and a separate file which has categorizations about loci/QTL/genes of interest for the individuals in the genotypic matrix. A training population can be created from a panel of individuals who have been previously screened for specific loci/QTL/genes, and this previous screening could be summarized into a category. Using the categorization of individuals which have been genotyped using a genome wide marker platform, a model can be trained to predict what category (haplotype) an individual belongs in based on their genetic sequence in the region associated with the locus/QTL/gene. These trained models can then be used to predict the haplotype of a locus/QTL/gene for individuals which have been genotyped with a genome wide platform yet not genotyped for the specific locus/QTL/gene. This package is based off work done by Winn et al 2021. For more specific information on this method, refer to . authors: - family-names: Winn given-names: Zachary email: zwinn@outlook.com orcid: https://orcid.org/0000-0003-1543-1527 repository: https://cran.r-universe.dev repository-code: https://github.com/zjwinn/HaploCatcher commit: 8157bf9aa2a30b960235a01beed8e507710a50e6 url: https://github.com/zjwinn/HaploCatcher date-released: '2026-06-01' contact: - family-names: Winn given-names: Zachary email: zwinn@outlook.com orcid: https://orcid.org/0000-0003-1543-1527