# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "HIMA" in publications use:'
type: software
license: GPL-3.0-only
title: 'HIMA: High-Dimensional Mediation Analysis'
version: 2.3.0
doi: 10.1093/bioinformatics/btw351
identifiers:
- type: doi
  value: 10.32614/CRAN.package.HIMA
abstract: 'Allows to estimate and test high-dimensional mediation effects based on
  advanced mediator screening and penalized regression techniques. Methods used in
  the package refer to Zhang H, Zheng Y, Zhang Z, Gao T, Joyce B, Yoon G, Zhang W,
  Schwartz J, Just A, Colicino E, Vokonas P, Zhao L, Lv J, Baccarelli A, Hou L, Liu
  L. Estimating and Testing High-dimensional Mediation Effects in Epigenetic Studies.
  Bioinformatics. (2016) <https://doi.org/10.1093/bioinformatics/btw351>. PMID: 27357171.'
authors:
- family-names: Zheng
  given-names: Yinan
  email: y-zheng@northwestern.edu
  orcid: https://orcid.org/0000-0002-2006-7320
- family-names: Zhang
  given-names: Haixiang
  email: haixiang.zhang@tju.edu.cn
- family-names: Hou
  given-names: Lifang
  email: l-hou@northwestern.edu
- family-names: Liu
  given-names: Lei
  email: lei.liu@wustl.edu
preferred-citation:
  type: article
  title: Estimating and Testing High-dimensional Mediation Effects in Epigenetic Studies
  authors:
  - family-names: Zhang
    given-names: Haixiang
    email: haixiang.zhang@tju.edu.cn
  - family-names: Zheng
    given-names: Yinan
    email: y-zheng@northwestern.edu
    orcid: https://orcid.org/0000-0002-2006-7320
  - family-names: Zhang
    given-names: Zhou
  - family-names: Gao
    given-names: Tao
  - family-names: Joyce
    given-names: Brian
  - family-names: Yoon
    given-names: Grace
  - family-names: Zhang
    given-names: Wei
  - family-names: Schwartz
    given-names: Joel
  - family-names: Just
    given-names: Allan
  - family-names: Colicino
    given-names: Elena
  - family-names: Vokonas
    given-names: Pantel
  - family-names: Zhao
    given-names: Lihui
  - family-names: Lv
    given-names: Jinchi
  - family-names: Baccarelli
    given-names: Andrea
  - family-names: Hou
    given-names: Lifang
    email: l-hou@northwestern.edu
  - family-names: Liu
    given-names: Lei
    email: lei.liu@wustl.edu
  journal: Bioinformatics
  year: '2016'
  volume: '32'
  issue: '20'
  doi: 10.1093/bioinformatics/btw351
  start: 3150-3154
repository: https://CRAN.R-project.org/package=HIMA
repository-code: https://github.com/YinanZheng/HIMA/issues/
url: https://github.com/YinanZheng/HIMA/
date-released: '2024-10-28'
contact:
- family-names: Zheng
  given-names: Yinan
  email: y-zheng@northwestern.edu
  orcid: https://orcid.org/0000-0002-2006-7320
references:
- type: article
  title: Mediation Analysis for Survival Data with High-Dimensional Mediators
  authors:
  - family-names: Zhang
    given-names: Haixiang
  - family-names: Zheng
    given-names: Yinan
  - family-names: Hou
    given-names: Lifang
  - family-names: Liu
    given-names: Lei
  journal: Bioinformatics
  year: '2021'
  volume: '37'
  issue: '21'
  doi: 10.1093/bioinformatics/btab564
  start: 3815-3821
- type: article
  title: Mediation effect selection in high-dimensional and compositional microbiome
    data
  authors:
  - family-names: Zhang
    given-names: Haixiang
  - family-names: Chen
    given-names: Jun
  - family-names: Feng
    given-names: Yang
  - family-names: Wang
    given-names: Chan
  - family-names: Li
    given-names: Huilin
  - family-names: Liu
    given-names: Lei
  journal: Statistics in medicine
  year: '2021'
  volume: '40'
  issue: '4'
  doi: 10.1002/sim.8808
  start: 885-896
- type: article
  title: 'HIMA2: high-dimensional mediation analysis and its application in epigenome-wide
    DNA methylation data'
  authors:
  - family-names: Chamila
    given-names: Perera
  - family-names: Zhang
    given-names: Haixiang
  - family-names: Zheng
    given-names: Yinan
  - family-names: Hou
    given-names: Lifang
  - family-names: Qu
    given-names: Annie
  - family-names: Zheng
    given-names: Cheng
  - family-names: Xie
    given-names: Ke
  - family-names: Liu
    given-names: Lei
  journal: BMC Bioinformatics
  year: '2022'
  volume: '23'
  issue: '1'
  doi: 10.1186/s12859-022-04748-1
  start: '296'
- type: article
  title: High-Dimensional Quantile Mediation Analysis with Application to a Birth
    Cohort Study of Mother–Newborn Pairs
  authors:
  - family-names: Zhang
    given-names: Haixiang
  - family-names: Hong
    given-names: Xiumei
  - family-names: Zheng
    given-names: Yinan
  - family-names: Hou
    given-names: Lifang
  - family-names: Zheng
    given-names: Cheng
  - family-names: Wang
    given-names: Xiaobin
  - family-names: Liu
    given-names: Lei
  journal: Bioinformatics
  year: '2024'
  volume: '40'
  issue: '2'
  doi: 10.1093/bioinformatics/btae055
  start: btae055
- type: article
  title: An Efficient Testing Procedure for High-dimensional Mediators with FDR Control
  authors:
  - family-names: Bai
    given-names: Xueyan
  - family-names: Zheng
    given-names: Yinan
  - family-names: Hou
    given-names: Lifang
  - family-names: Zheng
    given-names: Cheng
  - family-names: Liu
    given-names: Lei
  - family-names: Zhang
    given-names: Haixiang
  journal: Statistics in Biosciences
  year: '2024'
  doi: 10.1007/s12561-024-09447-4