Package: GenomicSig
Type: Package
Title: Computation of Genomic Signatures
Version: 0.1.0
Authors@R: 
  c(person("Mailarlinga", role = c("aut"), email = "jessimailar@gmail.com"), person("Shashi Bhushan Lal",  role = c("aut"), email = "sb.lal@icar.gov.in"), person("Anu Sharma", role = c("aut", "cre"), email = "anu.sharma@icar.gov.in"), person("Dwijesh Chandra Mishra", role = c("aut"), email = "dwij.mishra@gmail.com"), person("Sudhir Srivastava", role = c("aut"), email = "Sudhir.Srivastava@icar.gov.in"), person("Sanjeev Kumar", role = c("aut"), email = "sanjeev.kumar@icar.gov.in"), person("Girish Kumar Jha", role = c("aut"), email = "girish.jha@icar.gov.in"), person("Sayanti Guha Majumdar", role = c("aut"), email = "sayanti.guha@icar.gov.in"), person("Megha Garg", role = c("aut"), email = "meghagarg1989@gmail.com"), person("Sharanbasappa", role = c("ctb"), email = "smadival509@gmail.com"), person("Kabilan", "S", role = c("ctb"), email = "kabilan151414@gmail.com"))
Maintainer: Anu Sharma <anu.sharma@icar.gov.in>
Description: Genomic signatures represent unique features within a
        species' DNA, enabling the differentiation of species and
        offering broad applications across various fields. This package
        provides essential tools for calculating these specific
        signatures, streamlining the process for researchers and
        offering a comprehensive and time-saving solution for genomic
        analysis.The amino acid contents are identified based on the
        work published by Sandberg et al. (2003)
        <doi:10.1016/s0378-1119(03)00581-x> and Xiao et al. (2015)
        <doi:10.1093/bioinformatics/btv042>. The Average Mutual
        Information Profiles (AMIP) values are calculated based on the
        work of Bauer et al. (2008) <doi:10.1186/1471-2105-9-48>. The
        Chaos Game Representation (CGR) plot visualization was done
        based on the work of Deschavanne et al. (1999)
        <doi:10.1093/oxfordjournals.molbev.a026048> and Jeffrey et al.
        (1990) <doi:10.1093/nar/18.8.2163>. The GC content is
        calculated based on the work published by Nakabachi et al.
        (2006) <doi:10.1126/science.1134196> and Barbu et al. (1956)
        <https://pubmed.ncbi.nlm.nih.gov/13363015>. The Oligonucleotide
        Frequency Derived Error Gradient (OFDEG) values are computed
        based on the work published by Saeed et al. (2009)
        <doi:10.1186/1471-2164-10-S3-S10>. The Relative Synonymous
        Codon Usage (RSCU) values are calculated based on the work
        published by Elek (2018)
        <https://urn.nsk.hr/urn:nbn:hr:217:686131>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
RoxygenNote: 7.3.2
Imports: kaos, Biostrings, stats, entropy, seqinr
NeedsCompilation: no
Packaged: 2026-07-12 06:44:50 UTC; root
Author: Mailarlinga [aut], Shashi Bhushan Lal [aut], Anu Sharma [aut,
        cre], Dwijesh Chandra Mishra [aut], Sudhir Srivastava [aut],
        Sanjeev Kumar [aut], Girish Kumar Jha [aut], Sayanti Guha
        Majumdar [aut], Megha Garg [aut], Sharanbasappa [ctb], Kabilan
        S [ctb]
Config/pak/sysreqs: zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2024-09-12 02:53:13 UTC
RemoteUrl: https://github.com/cran/GenomicSig
RemoteRef: HEAD
RemoteSha: 52bece5bce250382c97863a8746ce5ab21e2c023