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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GFFStrandLoc" in publications use:'
type: software
license: GPL-3.0-only
title: 'GFFStrandLoc: Strand-Wise Gene and Protein Extraction from GFF3 Files'
version: 0.1.0
doi: 10.32614/CRAN.package.GFFStrandLoc
abstract: Facilitates the extraction and organization of strand-specific genomic features
  from GFF3 files. In many species and variants, high quality genome annotations are
  not always available, necessitating de novo annotation using tools such as AUGUSTUS
  (Stanke et al., 2006; <https://doi.org/10.1093/nar/gkl200>). However, downstream
  processing of such annotations to obtain structured information, such as strand-wise
  gene locations, transcript regions, and associated protein identifiers—can be computationally
  intensive and complex. 'GFFStrandLoc' provides a streamlined framework to parse
  GFF3 files and generate structured outputs containing strand-wise and region-wise
  genomic coordinates for each transcript, along with their associated protein information.
  Additionally, it enables users to define custom promoter lengths and extract corresponding
  promoter region coordinates for genes in a strand-aware manner. By simplifying post-annotation
  processing, it enhances the usability of de novo annotated genomic datasets for
  downstream analysis and interpretation.
authors:
- family-names: Ghosh
  given-names: Subham
  email: search4aghosh@gmail.com
- family-names: Grover
  given-names: Monendra
- family-names: Sinha
  given-names: Dipro
- family-names: Mishra
  given-names: Dwijesh
- family-names: Murmu
  given-names: Sneha
- family-names: Guha Majumdar
  given-names: Sayanti
- family-names: Angadi
  given-names: UB
- family-names: Yeasin
  given-names: Md
repository: https://cran.r-universe.dev
commit: 25880102d27d2d70be7378e3bf3cb79890259ad2
date-released: '2026-04-15'
contact:
- family-names: Ghosh
  given-names: Subham
  email: search4aghosh@gmail.com