Package: CeRNASeek
Type: Package
Title: Identification and Analysis of ceRNA Regulation
Version: 2.1.3
Date: 2020-04-20
Author: Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Maintainer: Mengying Zhang <zhangmengying@hrbmu.edu.cn>
Description: Provides several functions to identify and analyse miRNA
        sponge, including popular methods for identifying miRNA sponge
        interactions, two types of global ceRNA regulation prediction
        methods and four types of context-specific prediction methods(
        Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based on
        miRNA-messenger RNA regulation alone, or by integrating
        heterogeneous data, respectively. In addition, For predictive
        ceRNA relationship pairs, this package provides several
        downstream analysis algorithms, including regulatory network
        analysis and functional annotation analysis, as well as
        survival prognosis analysis based on expression of ceRNA
        ternary pair.
License: GPL-3
Encoding: UTF-8
LazyData: true
biocViews: competing endogenous RNA (ceRNA),
        GeneExpression,triplet,function,Software
Depends: R (>= 3.1.0)
Imports: gtools ,igraph,survival,parallel
Packaged: 2026-06-22 07:13:45 UTC; root
NeedsCompilation: no
Repository: https://cran.r-universe.dev
Date/Publication: 2020-04-29 07:00:02 UTC
RemoteUrl: https://github.com/cran/CeRNASeek
RemoteRef: HEAD
RemoteSha: 4a33060d7ab80b455cace905464f2e29a2bb5d58