NEWS

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CLONETv2 2.2.1 (2021-10-13)

• Set lower bound for corrected CN ratio (this solves issues for homozygous calls in noisy samples).

CLONETv2 2.2.0

• better support for WGS data. Functions compute_ploidy and compute_dna_admixture have paramter library_type to specify if sequencing data is targeted (WES) or whole genome (WGS).

CLONETv2 2.1.0 (2019-05-20)

• function compute_beta_table has now optional parameter plot_stats. If plot_stats is set to TRUE, the function prints statistics about the computation of beta table.

CLONETv2 2.0.0

• Package version of CLONET. Previous versions of CLONET were released as stand-alone tools. Details about older CLONET versions are available at bitbucket.org/deid00/clonet/.