Type: Package
Package: CBASSED50
Title: Process CBASS-Derived PAM Data
Version: 0.2.0
Authors@R: c(
    person(given = "Yulia", family = "Iakovleva",
            role = c("aut"),
            comment = c(ORCID = "0000-0002-0202-7245")),
    person(given = "Luigi", family = "Colin",
            email = "reefgenomics@gmail.com", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-6966-2817")),
    person(given = "Christian Robert", family = "Voolstra",
            role = c("aut"),
            comment = c(ORCID = "0000-0003-4555-3795")))
Maintainer: Luigi Colin <reefgenomics@gmail.com>
Description: Tools to process CBASS-derived PAM data efficiently.
        Minimal requirements are PAM-based photosynthetic efficiency
        data (or data from any other continuous variable that changes
        with temperature, e.g. relative bleaching scores) from 4 coral
        samples (nubbins) subjected to 4 temperature profiles of at
        least 2 colonies from 1 coral species from 1 site. Please refer
        to the following CBASS (Coral Bleaching Automated Stress
        System) papers for in-depth information regarding CBASS acute
        thermal stress assays, experimental design considerations, and
        ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al.
        (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al.
        (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al.
        (2025) <doi:10.1146/annurev-marine-032223-024511>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports: drc, rlog, stats, utils, dplyr, ggplot2, readxl, glue
Depends: R (>= 3.5.0)
Date: 2025-05-28
NeedsCompilation: no
Packaged: 2026-09-20 10:07:43 UTC; root
Author: Yulia Iakovleva [aut] (ORCID:
        <https://orcid.org/0000-0002-0202-7245>), Luigi Colin [aut,
        cre] (ORCID: <https://orcid.org/0000-0002-6966-2817>),
        Christian Robert Voolstra [aut] (ORCID:
        <https://orcid.org/0000-0003-4555-3795>)
Repository: https://cran.r-universe.dev
Date/Publication: 2025-06-06 12:50:08 UTC
RemoteUrl: https://github.com/cran/CBASSED50
RemoteRef: HEAD
RemoteSha: f659cbd53d2d3ea82dc5475a7017a71318f219a6