# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "Bios2cor" in publications use:' type: software license: GPL-2.0-or-later title: 'Bios2cor: From Biological Sequences and Simulations to Correlation Analysis' version: 2.2.2 doi: 10.32614/CRAN.package.Bios2cor abstract: 'Utilities for computation and analysis of correlation/covariation in multiple sequence alignments and in side chain motions during molecular dynamics simulations. Features include the computation of correlation/covariation scores using a variety of scoring functions between either sequence positions in alignments or side chain dihedral angles in molecular dynamics simulations and utilities to analyze the correlation/covariation matrix through a variety of tools including network representation and principal components analysis. In addition, several utility functions are based on the R graphical environment to provide friendly tools for help in data interpretation. Examples of sequence covariation analysis are provided in: (1) Pele J, Moreau M, Abdi H, Rodien P, Castel H, Chabbert M (2014) and (2) Taddese B, Deniaud M, Garnier A, Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) . An example of side chain correlated motion analysis is provided in: Taddese B, Garnier A, Abdi H, Henrion D, Chabbert M (2020) . This work was supported by the French National Research Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant number: 100567).' authors: - family-names: Taddese given-names: Bruck - family-names: Garnier given-names: Antoine - family-names: Deniaud given-names: Madeline - family-names: Chabbert given-names: Marie email: marie.chabbert@univ-angers.fr repository: https://CRAN.R-project.org/package=Bios2cor date-released: '2024-10-15' contact: - family-names: Chabbert given-names: Marie email: marie.chabbert@univ-angers.fr