Package: BIGpopA
Title: Pedigree Validation Genetic Composition of Diploids & Polyploids
Version: 1.0.5
Authors@R: c(person(given='Josue',
                    family='Chinchilla-Vargas',
                    email='josue.chinchilla@ufl.edu',
                    role=c('cre','aut')),
             person(given='Alexander',
                    family='Sandercock',
                    role=c('aut')),
             person('University', "of Florida",
                    role=c('cph'),
                    comment = "Breeding Insight"))
Maintainer: Josue Chinchilla-Vargas <josue.chinchilla@ufl.edu>
Description: Tools for pedigree quality control and genomic breed/line
        composition estimation in diploid and polyploid breeding
        populations. 'BIGpopA' provides functions to check and correct
        common pedigree errors, assign parentage from SNP genotype data
        using Mendelian error rates, validate parent-offspring trios,
        and estimate genome-wide breed or line composition using
        quadratic programming. Supports both diploid and polyploid
        species. For more details about the included 'breedTools'
        functions, see Funkhouser et al. (2017)
        <doi:10.2527/tas2016.0003>.
License: Apache License (>= 2)
URL: https://github.com/Breeding-Insight/BIGpopA
BugReports: https://github.com/Breeding-Insight/BIGpopA/issues
Encoding: UTF-8
Depends: R (>= 4.4.0)
Imports: dplyr, janitor, quadprog, data.table, ggplot2
Suggests: covr, knitr (>= 1.10), rmarkdown, testthat (>= 3.0.0)
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-06-24 13:21:43 UTC; root
Author: Josue Chinchilla-Vargas [cre, aut], Alexander Sandercock [aut],
        University of Florida [cph] (Breeding Insight)
Repository: https://cran.r-universe.dev
Date/Publication: 2026-06-24 08:20:24 UTC
RemoteUrl: https://github.com/cran/BIGpopA
RemoteRef: HEAD
RemoteSha: a9b967df597fed541e90f0994163bc51dbb0da56