Package: BBNI
Title: Bayesian Inference of Boolean Genetic Networks
Version: 0.1.1
Authors@R: c(
    person(given = "Anson", family = "Li",
           email = "liyuanrui618@gmail.com",
           role = c("aut", "cre")),
    person(given = "Shengtong", family = "Han",
           email = "shengtong.han@marquette.edu",
           role = "aut")
    )
Description: Implements a fully Bayesian Markov chain Monte Carlo
        (MCMC) approach for inferring the topology and Boolean logic
        transition functions of gene regulatory networks from noisy,
        binary time-series expression data. Network structure and
        Boolean rules are sampled jointly from their posterior
        distribution, providing principled uncertainty quantification
        rather than a single point estimate. Method described in Han et
        al. (2014) <doi:10.1371/journal.pone.0115806>.
Depends: R (>= 4.1.0)
License: BSD_3_clause + file LICENSE
URL: https://anson-li8.github.io/BBNI/,
        https://github.com/anson-li8/BBNI
BugReports: https://github.com/anson-li8/BBNI/issues
Encoding: UTF-8
Language: en-US
RoxygenNote: 8.0.0
Imports: bitops, stats
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-07-15 20:45:25 UTC; root
Author: Anson Li [aut, cre], Shengtong Han [aut]
Maintainer: Anson Li <liyuanrui618@gmail.com>
Repository: https://cran.r-universe.dev
Date/Publication: 2026-07-15 17:50:18 UTC
RemoteUrl: https://github.com/cran/BBNI
RemoteRef: HEAD
RemoteSha: 751b38427aefa99ba7e22a06f1f6b401a6a55b71