Package: BASiNET
Title: Classification of RNA Sequences using Complex Network Theory
Version: 0.0.5
Authors@R: c(
        person("Eric Augusto", "Ito", 
        email = "ericaugustoito@hotmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0002-0030-6881")),
        person("Fabricio Martins", "Lopes", 
        email = "fabricio@utfpr.edu.br",
        role = c("aut","cre"),
        comment = c(ORCID = "0000-0002-8786-3313")))
Description: It makes the creation of networks from sequences of RNA,
        with this is done the abstraction of characteristics of these
        networks with a methodology of threshold for the purpose of
        making a classification between the classes of the sequences.
        There are four data present in the 'BASiNET' package,
        "sequences", "sequences2", "sequences-predict" and
        "sequences2-predict" with 11, 10, 11 and 11 sequences
        respectively. These sequences were taken from the data set used
        in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin,
        2014) <doi:10.1186/1471-2105-15-311>, these sequences are used
        to run examples. The BASiNET was published on Nucleic Acids
        Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio;
        PEREIRA, Felipe; LOPES, Fabrício, 2018)
        <doi:10.1093/nar/gky462>.
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
Imports: igraph, Biostrings, RWeka, randomForest, rmcfs, grDevices,
        graphics, stats, rJava
biocViews: Software, BiologicalQuestion, GenePrediction
RoxygenNote: 6.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-10-23 10:12:39 UTC; root
Author: Eric Augusto Ito [aut]
        (<https://orcid.org/0000-0002-0030-6881>), Fabricio Martins
        Lopes [aut, cre] (<https://orcid.org/0000-0002-8786-3313>)
Maintainer: Fabricio Martins Lopes <fabricio@utfpr.edu.br>
Config/pak/sysreqs: zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2022-08-19 07:50:25 UTC
RemoteUrl: https://github.com/cran/BASiNET
RemoteRef: HEAD
RemoteSha: 774d97a18f5622d3c8009c6bb452976a55654756