Package: AntibodyForests
Title: Delineating Inter- And Intra-Antibody Repertoire Evolution
Version: 1.1.0
Authors@R: c(
    person("Daphne", "van Ginneken", email = "daphne.v.ginneken@gmail.com", role = c("aut", "cre")),
    person("Alexander", "Yermanos", role = "aut"),
    person("Valentijn", "Tromp", role = "aut"),
    person("Tudor-Stefan", "Cotet", role = "ctb")
  )
Maintainer: Daphne van Ginneken <daphne.v.ginneken@gmail.com>
Description: The generated wealth of immune repertoire sequencing data
        requires software to investigate and quantify inter- and
        intra-antibody repertoire evolution to uncover how B cells
        evolve during immune responses. Here, we present
        'AntibodyForests', a software to investigate and quantify
        inter- and intra-antibody repertoire evolution.
License: GPL-2
Depends: R (>= 4.0.0)
Imports: ape, Biostrings, dplyr, graphics, grDevices, gtools, igraph,
        magrittr, parallel, pwalign, rlang, scales, seqinr, stats,
        stringdist, stringr, tidyr, utils, viridis
Suggests: alakazam, base64enc, bio3d, combinat, devtools, DT, fpc,
        ggplot2, ggrepel, ggsignif, htmltools, knitr, msa, phangorn,
        pheatmap, philentropy, Peptides, Rcompadre, rmarkdown, RPANDA,
        swipeR
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2026-07-12 06:54:55 UTC; root
Author: Daphne van Ginneken [aut, cre], Alexander Yermanos [aut],
        Valentijn Tromp [aut], Tudor-Stefan Cotet [ctb]
Config/pak/sysreqs: zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2025-07-17 15:30:02 UTC
RemoteUrl: https://github.com/cran/AntibodyForests
RemoteRef: HEAD
RemoteSha: a1c1c44e65a321cc7e93e36820959faf9c16895a