# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "APackOfTheClones" in publications use:'
type: software
license: MIT
title: 'APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune
  Profiles'
version: 1.2.4
doi: 10.21105/joss.06868
identifiers:
- type: doi
  value: 10.32614/CRAN.package.APackOfTheClones
- type: url
  value: https://joss.theoj.org/papers/10.21105/joss.06868
abstract: 'Visualize clonal expansion via circle-packing. ''APackOfTheClones'' extends
  ''scRepertoire'' to produce a publication-ready visualization of clonal expansion
  at a single cell resolution, by representing expanded clones as differently sized
  circles. The method was originally implemented by Murray Christian and Ben Murrell
  in the following immunology study: Ma et al. (2021) <https://doi.org/10.1126/sciimmunol.abg6356>.'
authors:
- family-names: Yang
  given-names: Qile
  email: qile.yang@berkeley.edu
  orcid: https://orcid.org/0009-0005-0148-2499
preferred-citation:
  type: article
  title: 'APackOfTheClones: Visualization of clonal expansion with circle packing'
  authors:
  - family-names: Yang
    given-names: Qile
    email: qile.yang@berkeley.edu
    orcid: https://orcid.org/0009-0005-0148-2499
  year: '2024'
  url: https://doi.org/10.21105/joss.06868
  doi: 10.21105/joss.06868
  journal: Journal of Open Source Software
  volume: '9'
  issue: '103'
  start: '6868'
repository: https://CRAN.R-project.org/package=APackOfTheClones
repository-code: https://github.com/Qile0317/APackOfTheClones
url: https://qile0317.github.io/APackOfTheClones/
date-released: '2024-11-18'
contact:
- family-names: Yang
  given-names: Qile
  email: qile.yang@berkeley.edu
  orcid: https://orcid.org/0009-0005-0148-2499